Characterization of the complete chloroplast genome sequence of Agave durangensis (Asparagales: Asparagaceae: Agavoideae).

Agave durangensis commonly known as agave cenizo, is an endemic Agave species in Mexico used for mescal production, yet its taxonomic delimitation is still controversial. This study aimed to enhance taxonomic clarity by characterizing its chloroplast genome. Chloroplast DNA was isolated from 2-year-old A. durangensis leaves. The complete chloroplast genome size was 156,441 bp, comprising a large single-copy region (LSC), a pair of inverted repeat regions (IR), and a small single-copy region (SSC). Annotation revealed 87 protein-coding genes, 38 tRNAs, and 8 rRNAs, with notable gene inversions. Phylogenetic analysis suggests, A. durangensis forms a separate lineage within the Agave genus.

Taxonomic revision of Muhlenbergia (Poaceae, Chloridoideae, Cynodonteae, Muhlenbergiinae) in Central America: phylogeny and classification.

A taxonomic treatment of 38 species of Muhlenbergia, a phylogeny based on analysis of six DNA sequence markers, and classification of Muhlenbergia for Central America (Belize, Costa Rica, El Salvador, Guatemala, Honduras, Nicaragua, Panama; and Campeche, Chiapas, Quintana Roo, Tabasco, and Yucatán, México) is given. With the support from a molecular phylogeny we describe Muhlenbergiasubg.Ramulosaesubgen. nov. In our treatment we place M.gigantea (younger name) as a synonym of M.mutica. Lectotypes are designated for the names Agrostismicrosperma Lag., Epicampesgigantea E. Fourn., Lamarckiatenella DC., Muhlenbergiaadspersa Trin., M.diversiglumis Trin., M.exilis E. Fourn., M.flabellata Mez, M.setarioides E. Fourn., Pereilemaciliatum E. Fourn., P.crinitumvar.cirratum E. Fourn., Podosemumciliatum Kunth, P.tenuissimum J. Presl, and Schellingiatenera Steud.

Comparison of the phenolic contents and epigenetic and genetic variability of wild and cultivated watercress (Rorippa nasturtium var. aquaticum L.)

Background: Epigenetic modifications are key factors modulating the expression of genes involved in the synthesis of phytochemicals. The knowledge of plant epigenetic and genetic variations can contribute to enhance the production of bioactive compounds. These issues have been little explored thus far in Rorippa nasturtium var. aquaticum L. (watercress), an edible and medicinal plant. The aim of the current study was to determine and compare the phenolic composition and epigenetic and genetic variations between wild and cultivated watercress. Results: Significant differences were found in the quantitative phenolic composition between wild and cultivated watercress. The eight primer combinations used in the methylation-sensitive amplification polymorphism (MSAP) method revealed different epigenetic status for each watercress type, the cultivated one being the most epigenetically variable. The genetic variability revealed by the EcoRI/MspI amplification profile and also by eight inter-simple sequence repeat (ISSR) primers was different between the two types of watercress. The results of the Mantel test showed that the correlation between genetic and epigenetic variations has diminished in the cultivated type. Cluster analyses showed that the epigenetic and genetic characterizations clearly discriminated between wild and cultivated watercress. Conclusions: Relevant chemical, epigenetic, and genetic differences have emerged between wild and cultivated watercress. These differences can contribute to fingerprint and develop quality control tools for the integral and safety use and the commercialization of watercress. The richness of epialleles could support the development of tools to manipulate the watercress epigenome to develop high bioproduct­producing cultivars

Phenolic constituents and antioxidant properties of five wild species of Physalis (Solanaceae).

BACKGROUND: Fruits of wild species of the genus Physalis are consumed as food and calyces and leaves are used in traditional medicine. The phenolic composition of the species of this genus have been scarcely studied. To contribute to a better knowledge for the use of all the potential of these wild species of plants, leaves, fruits, and calyces of five wild species of the genus were analyzed for their phenolic composition and antioxidant properties. RESULTS: Important tissue- and species-dependent variations were found. Calyces of Physalis subulata showed the highest contents of phenolics (176.58 mg of gallic acid equivalents/g dry tissue), flavonoids (39.63 mg/g dry tissue), and phenolic acids (50.57 mg of quercitrin equivalents/g dry tissue), and its leaves displayed the highest total antioxidant capacity (3.59 mg of ascorbic acid equivalents/mL) and one of the highest reduction powers (0.54 µg of ascorbic acid equivalents/mL). A high performance liquid chromatography with photodiode array detection analysis revealed a total of 28 phenolic compounds in foliar tissues (mainly kaempferol-3-O-glycosides), 16 in fruits (mainly phenolic acids), and 16 in calyces (mainly kaempferol-3-O-glycosides); the profiles of these compounds in the three types of tissue were species-specific. CONCLUSIONS: The studied species of Physalis are important sources of phenolics with relevant antioxidant activity. The current results indicate that phenolic profiles are valuable specific chemical markers and can be relevant as food tracing and authenticity indicators for plant-based preparations involving species of Physalis.

Evaluation of foliar phenols of 25 Mexican varieties of common bean (Phaseolus vulgaris L.) as antioxidants and varietal markers.

The antioxidant properties and the foliar phenol composition of 25 Mexican varieties of Phaseolus vulgaris L. (common bean) were evaluated. Phaseolus coccineus was analysed with comparative aims. The high performance liquid chromatography with photodiode array detection analysis revealed 27 phenolics in the leaves of P. vulgaris (13 quercetin-3-O-glycosides, 8 kaempferol-3-O-glycosides, 2 myricetin glycosides and 4 phenolic acids) and 5 in P. coccineus (2 kaempferol-3-O-glycoside, 2 apigenin-7-O-glycoside and 1 luteolin-7-O-glycoside). All extracts showed high levels of phenols and flavonoids (0.964-5.601 mg g⁻¹ dry tissue, and 0.287-1.418 mg g⁻¹ dry tissue, respectively) and relevant antioxidant properties, suggesting that the leaves of the varieties of P. vulgaris are a significant source of natural antioxidants. The foliar phenol profiles were species-specific and, besides, the qualitative variation allowed discriminating among varieties of P. vulgaris. These profiles can represent an important varietal authenticity proof.